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Comment on "Deficiencies in Molecular Dynamics Simulation-Based Prediction of Protein-DNA Binding Free Energy Landscapes" Gapsys V, Khabiri M, de Groot BL, Freddolino PL Journal of Physical Chemistry B, 124(6), 1115, 2020 |
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Deficiencies in Molecular Dynamics Simulation-Based Prediction of Protein-DNA Binding Free Energy Landscapes (vol 121, pg 5151, 2017) Khabiri M, Freddolino PL Journal of Physical Chemistry B, 124(49), 11311, 2020 |
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Deficiencies in Molecular Dynamics Simulation-Based Prediction of Protein-DNA Binding Free Energy Landscapes Khabiri M, Freddolino PL Journal of Physical Chemistry B, 121(20), 5151, 2017 |
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Simulations of a Protein Crystal with a High Resolution X-ray Structure: Evaluation of Force Fields and Water Models Cerutti DS, Freddolino PL, Duke RE, Case DA Journal of Physical Chemistry B, 114(40), 12811, 2010 |
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Assembly of lipids and proteins into lipoprotein particles Shih AY, Arkhipov A, Freddolino PL, Sligar SG, Schulten K Journal of Physical Chemistry B, 111(38), 11095, 2007 |
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Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations Shih AY, Freddolino PL, Arkhipov A, Schulten K Journal of Structural Biology, 157(3), 579, 2007 |
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Coarse grained protein-lipid model with application to lipoprotein particles Shih AY, Arkhipov A, Freddolino PL, Schulten K Journal of Physical Chemistry B, 110(8), 3674, 2006 |
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When light falls in LOV: A quantum mechanical/molecular mechanical study of photoexcitation in Phot-LOV1 of Chlamydomonas reinhardtii Dittrich M, Freddolino PL, Schulten K Journal of Physical Chemistry B, 109(26), 13006, 2005 |