| 1 |
Introduction of Phosphorylated Residues into the UNRES Coarse-Grained Model: Toward Modeling of Signaling Processes
Sieradzan AK, Bogunia M, Mech P, Ganzynkowicz R, Gieldon A, Liwo A, Makowski M
Journal of Physical Chemistry B, 123(27), 5721, 2019 |
| 2 |
Extension of the UNRES Coarse-Grained Force Field to Membrane Proteins in the Lipid Bilayer
Zieba K, Slusarz M, Slusarz R, Liwo A, Czaplewski C, Sieradzan AK
Journal of Physical Chemistry B, 123(37), 7829, 2019 |
| 3 |
Protein-Ligand Interaction Energy-Based Entropy Calculations: Fundamental Challenges For Flexible Systems
Kohut G, Liwo A, Bosze S, Beke-Somfai T, Samsonov SA
Journal of Physical Chemistry B, 122(32), 7821, 2018 |
| 4 |
Simple Physics-Based Analytical Formulas for the Potentials of Mean Force of the Interaction of Amino Acid Side Chains in Water. VII. Charged-Hydrophobic/Polar and Polar-Hydrophobic/Polar Side Chains
Makowski M, Liwo A, Scheraga HA
Journal of Physical Chemistry B, 121(2), 379, 2017 |
| 5 |
Theoretical Studies of Interactions between O-Phosphorylated and Standard Amino-Acid Side-Chain Models in Water
Wisniewska M, Sobolewski E, Oldziej S, Liwo A, Scheraga HA, Makowski M
Journal of Physical Chemistry B, 119(27), 8526, 2015 |
| 6 |
Toward Temperature-Dependent Coarse-Grained Potentials of Side-Chain Interactions for Protein Folding Simulations. II. Molecular Dynamics Study of Pairs of Different Types of Interactions in Water at Various Temperatures
Sobolewski E, Oldziej S, Wisniewska M, Liwo A, Makowski M
Journal of Physical Chemistry B, 116(23), 6844, 2012 |
| 7 |
Conformational Dynamics of the Trp-Cage Miniprotein at Its Folding Temperature
Halabis A, Zmudzinska W, Liwo A, Oldziej S
Journal of Physical Chemistry B, 116(23), 6898, 2012 |
| 8 |
Simple Physics-Based Analytical Formulas for the Potentials of Mean Force of the Interaction of Amino-Acid Side Chains in Water. V. Like-Charged Side Chains
Makowski M, Liwo A, Sobolewski E, Scheraga HA
Journal of Physical Chemistry B, 115(19), 6119, 2011 |
| 9 |
Simple Physics-Based Analytical Formulas for the Potentials of Mean Force of the Interaction of Amino-Acid Side Chains in Water. VI. Oppositely Charged Side Chains
Makowski M, Liwo A, Scheragas HA
Journal of Physical Chemistry B, 115(19), 6130, 2011 |
| 10 |
A Study of the alpha-Helical Intermediate Preceding the Aggregation of the Amino-Terminal Fragment of the beta Amyloid Peptide (A beta(1-28))
Rojas AV, Liwo A, Scheraga HA
Journal of Physical Chemistry B, 115(44), 12978, 2011 |
