| 1 |
Role of S-turn2 in the Structure, Dynamics, and Function of Mitochondrial Ribosomal A-Site. A Bioinformatics and Molecular Dynamics Simulation Study
Panecka J, Havrila M, Reblova K, Sponer J, Trylska J
Journal of Physical Chemistry B, 118(24), 6687, 2014 |
| 2 |
Bioinformatics and Molecular Dynamics Simulation Study of L1 Stalk Non-Canonical rRNA Elements: Kink-Turns, Loops, and Tetraloops
Krepl M, Reblova K, Koca J, Sponer J
Journal of Physical Chemistry B, 117(18), 5540, 2013 |
| 3 |
lsosteric and Nonisosteric Base Pairs in RNA Motifs: Molecular Dynamics and Bioinformatics Study of the Sarcin Ricin Internal Loop
Havrila M, Reblova K, Zirbel CL, Leontis NB, Sponer J
Journal of Physical Chemistry B, 117(46), 14302, 2013 |
| 4 |
A-Minor Tertiary Interactions in RNA Kink-Turns. Molecular Dynamics and Quantum Chemical Analysis
Reblova K, Sponer JE, Spackova N, Besseova I, Sponer J
Journal of Physical Chemistry B, 115(47), 13897, 2011 |
| 5 |
Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H(+) Forms Are Most Consistent with Crystal Structures of Hairpin Ribozyme
Mlynsky V, Banas P, Hollas D, Reblova K, Walter NG, Sponer J, Otyepka M
Journal of Physical Chemistry B, 114(19), 6642, 2010 |
| 6 |
Structural Dynamics of the Box C/D RNA Kink-Turn and Its Complex with Proteins: The Role of the A-Minor 0 Interaction, Long-Residency Water Bridges, and Structural Ion-Binding Sites Revealed by Molecular Simulations
Spackova N, Reblova K, Sponer J
Journal of Physical Chemistry B, 114(32), 10581, 2010 |
| 7 |
Leading RNA tertiary interactions: Structures, energies, and water insertion of a-minor and p-interactions. A quantum chemical view
Sponer JE, Reblova K, Mokdad A, Sychrovsky V, Leszczynski J, Sponer J
Journal of Physical Chemistry B, 111(30), 9153, 2007 |
