| 1 |
Relative Stability of Different DNA Guanine Quadruplex Stem Topologies Derived Using Large-Scale Quantum-Chemical Computations
Sponer J, Mladek A, Spackova N, Cang XH, Cheatham TE, Grimme S
Journal of the American Chemical Society, 135(26), 9785, 2013 |
| 2 |
A-Minor Tertiary Interactions in RNA Kink-Turns. Molecular Dynamics and Quantum Chemical Analysis
Reblova K, Sponer JE, Spackova N, Besseova I, Sponer J
Journal of Physical Chemistry B, 115(47), 13897, 2011 |
| 3 |
NMR Cross-Correlated Relaxation Rates Reveal Ion Coordination Sites in DNA
Fiala R, Spackova N, Foldynova-Trantirkova S, Sponer J, Sklenar V, Trantirek L
Journal of the American Chemical Society, 133(35), 13790, 2011 |
| 4 |
Structural Dynamics of the Box C/D RNA Kink-Turn and Its Complex with Proteins: The Role of the A-Minor 0 Interaction, Long-Residency Water Bridges, and Structural Ion-Binding Sites Revealed by Molecular Simulations
Spackova N, Reblova K, Sponer J
Journal of Physical Chemistry B, 114(32), 10581, 2010 |
| 5 |
Calculation of structural behavior of indirect NMR spin-spin couplings in the backbone of nucleic acids
Sychrovsky V, Vokacova Z, Sponer J, Spackova N, Schneider B
Journal of Physical Chemistry B, 110(45), 22894, 2006 |
| 6 |
Non-Watson-Crick base pairing in RNA. Quantum chemical analysis of the cis Watson-Crick/sugar edge base pair family
Sponer JE, Spackova N, Kulhanek P, Leszczynski J, Sponer J
Journal of Physical Chemistry A, 109(10), 2292, 2005 |
| 7 |
Principles of RNA base pairing: Structures and energies of the trans Watson-Crick/sugar edge base pairs
Sponer JE, Spackova N, Leszczynski J, Sponer J
Journal of Physical Chemistry B, 109(22), 11399, 2005 |
| 8 |
Theoretical study of the guanine -> 6-thioguanine substitution in duplexes, triplexes, and tetraplexes
Spackova N, Cubero E, Sponer J, Orozco M
Journal of the American Chemical Society, 126(44), 14642, 2004 |
| 9 |
Theoretical study of binding of hydrated Zn(II) and Mg(II) cations to 5'-guanosine monophosphate. Toward polarizable molecular mechanics for DNA and RNA
Gresh N, Sponer JE, Spackova N, Leszczynski J, Sponer J
Journal of Physical Chemistry B, 107(33), 8669, 2003 |
| 10 |
Molecular dynamics simulations and thermodynamics analysis of DNA-drug complexes. Minor groove binding between 4',6-diamidino-2-phenylindole and DNA duplexes in solution
Spackova N, Cheatham TE, Ryjacek F, Lankas F, van Meervelt L, Hobza P, Sponer J
Journal of the American Chemical Society, 125(7), 1759, 2003 |
