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In-silico media optimization for continuous cultures using genome scale metabolic networks: The case of CHO-K1 Perez-Fernandez BA, Fernandez-de-Cossio-Diaz J, Boggiano T, Leon K, Mulet R Biotechnology and Bioengineering, 118(5), 1884, 2021 |
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Extension of the yeast metabolic model to include iron metabolism and its use to estimate global levels of iron-recruiting enzyme abundance from cofactor requirements Dikicioglu D, Oliver SG Biotechnology and Bioengineering, 116(3), 610, 2019 |
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Metabolic modeling of energy balances in Mycoplasma hyopneumoniae shows that pyruvate addition increases growth rate Kamminga T, Slagman SJ, Bijlsma JJE, dos Santos VAPM, Suarez-Diez M, Schaap PJ Biotechnology and Bioengineering, 114(10), 2339, 2017 |
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Metabolic networks to generate pyruvate, PEP and ATP from glycerol in Pseudomonas fluorescens Alhasawi A, Thomas SC, Appanna VD Enzyme and Microbial Technology, 85, 51, 2016 |
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Reconstruction of metabolic networks in a fluoranthene-degrading enrichments from polycyclic aromatic hydrocarbon polluted soil Zhao JK, Li XM, Ai GM, Deng Y, Liu SJ, Jiang CY Journal of Hazardous Materials, 318, 90, 2016 |
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Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism Tabe-Bordbar S, Marashi SA Biotechnology Letters, 35(12), 2039, 2013 |
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Omix - A Visualization Tool for Metabolic Networks with Highest Usability and Customizability in Focus Droste P, Noh K, Wiechert W Chemie Ingenieur Technik, 85(6), 849, 2013 |
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Continuous modeling of metabolic networks with gene regulation in yeast and in vivo determination of rate parameters Moisset P, Vaisman D, Cintolesi A, Urrutia J, Rapaport I, Andrews BA, Asenjo JA Biotechnology and Bioengineering, 109(9), 2325, 2012 |
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The benefits of being transient: isotope-based metabolic flux analysis at the short time scale Noh K, Wiechert W Applied Microbiology and Biotechnology, 91(5), 1247, 2011 |
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RNA-Seq of the xylose-fermenting yeast Scheffersomyces stipitis cultivated in glucose or xylose Yuan TZ, Ren Y, Meng K, Feng Y, Yang PL, Wang SJ, Shi PJ, Wang L, Xie DX, Yao B Applied Microbiology and Biotechnology, 92(6), 1237, 2011 |