A study of inherent noise sources present in a purpose built flame atomic magneto-optic rotation (AMOR) spectrometer system was carried out with a view to identifying their sources. Two different optical configurations were employed, a crossed polariser and a 45 degrees offset polariser configuration. The offset polariser configuration was operated in both an AMOR and atomic absorption (AA) mode for the noise measurements. Two main interference frequencies were found to occur in all the optical measurement modes. An interference flame feature frequency (15.5 Hz -39.0 Hz) which arose from an "organ-pipe" effect in the gas flow through the flame cooling sheets. The second interference frequency (at 100 Hz) was thought to arise due to modulation of the analytes magneto-optic properties due to ripple on the electromagnet d.c. power supply. Photon noise and fluctuation noise were found to be present as background noise. The fluctuation noise was dominant at higher analyte concentrations. The characteristics and origins of fluctuation noise are discussed and investigated for each measurement mode. The noise spectra of the conventional AA measurements were compared with those of the contemporary AMOR measurements, to ascertain any differences in noise power spectra which may affect the signal-to-noise ratio.