This paper proposes a finite element (FE) model of a novel wooden window frame typology and validates it by experimental tests on window frames and corner joint specimens. The innovation consists of the application of the structural silicone sealant only at the interface between wood and one of the thin glass layers of the double-glazing glass, so achieving a low application depth. This technique reduces the sealant quantity and allows the disassembly and substitution of the glass from the frame in case of breakage. In order to inform the FE model of the whole frame, the dowelled butt corner joint strength is measured by specific experimental tests. The results show a good correlation between the FE model and the experimental results in the range of small frame deformations, which are of interest for the proposed application. In particular, the FE curve overestimates the bottom corner displacement of about 17% at 1000N load, 7% at 2000N and less than 5% at higher applied force on the upper corner. The model is then applied to various wooden frame geometries in order to evaluate if the proposed silicone application mode and dowelled corner joints type allow an acceptable stiffness of the frame, and, in particular, low deformations of the bottom corner joint, in order to maintain the wooden frame functionality when subject to external loads. The approach could be useful when assessing optimal sealing application modes, wood-sealant-glass joint geometries, corner joint geometries and window frame geometries to limit the bottom corner joint deformation within the required technical specifications.