The surface activity and aggregation behavior of two synthesized boronic acid based anionic surfactants, sodium salt of 2-dodecyl pyridine-S-boronic acid (SDDPB) and sodium salt of 2-oxydodecyl pyridine-S-boronic acid (SODDPB), were studied in buffer solution at pH 9 and 13 containing carbohydrates. The self-assembly formation was investigated by use of a number of techniques including surface tension, conductivity, fluorescence spectroscopy, dynamic light scattering, X-ray diffraction, and transmission electron microscopy (TEM). Both of the amphiphiles exhibit a single break in the surface tension vs log(concentration) plots, indicating existence of one critical aggregation concentration. Steady state fluorescence spectroscopy was used to determine the polarity indexes using pyrene and the rigidity of the microenvironments of the aggregates using 1,6-diphenyl-1,3,5-hexatriene (DPH) as fluorescence probe molecules. The pK(a)'s of both amphiphiles were determined in buffer solutions of different pH's. XRD studies were performed to shed light on the morphology of the self-assemblies. TEM micrographs revealed the existence of vesicles for both the amphiphiles in buffer solution of pH 9, but at pH 13, TEM pictures indicate the existence of closed vesicles in SDDPB solution and at concentrated solution the vesicles are fused to form sponge-like micelles. After aging the vesicular solution of pH 13 of SDDPB, the closed vesicles are destroyed. In contrast, for SODDPB at pH 13, TEM pictures suggest the existence of spherical and complex micelles in solution which were further transformed into crystal-like structure upon aging. The average hydrodynamic radii were determined by dynamic light scattering measurement. Therefore, for the first time, we have successfully synthesized two new surfactants containing pyridyl-boronic acid as a headgroup which shows remarkable tuning of morphology in two different pH's and in the presence of two different carbohydrates.