In this paper, heat transfer and flow field analysis in anode side of direct methanol fuel cells (DMFCs) is numerically studied. To enhance the heat exchange between bottom cold wall and core flow, bottom wall of fluid delivery channel is considered as corrugated boundary instead of straight (flat) one. Four different shapes of corrugated boundary are recommended here: rectangular shape, trapezoidal shape, triangular shape and wavy (sinusoidal) shape. The top wall of the channel (catalyst layer boundary) is taken as hot boundary, because reaction occurs in catalyst layer and the bottom wall of the channel is considered as cold boundary due to coolant existence. The governing equations are numerically solved in the domain by the control volume approach based on the SIMPLE technique (1972). A wide spectrum of numerical studies is performed over a range of various shape boundaries, Reynolds number, triangle block number, and the triangle block amplitude. The performed parametric studies show that corrugated channel with trapezoidal, triangular and wavy shape enhances the heat exchange up to 90%. With these boundaries, cooling purpose of reacting flow in anode side of DMFCs would be better than straight one. Also, from the analogy between the heat and mass transfer problems, it is expected that the consumption of reacting species within the catalyst layer of DMFCs enhance. The present work provides helpful guidelines to the bipolar plate manufacturers of DMFCs to considerably enhance heat transfer and performance of the anode side of DMFC. (C) 2013 Elsevier Ltd. All rights reserved.