To investigate relationships between morphology and proton conductivity in ionic copolymer membranes, we have studied two series of fluorous copolymers bearing polystyrene grafts sulfonated from 0 to 100%. Small-angle X-ray and neutron scattering experiments reveal a disordered, partially phase-separated system consisting of fluorous domains in a partially sulfonated polystyrene matrix with aggregation of ion-rich domains within the matrix. The size of the fluorous domains depends on graft density, and their packing depends on the graft chain length. The spacing of the ion-rich domains is remarkably independent of either graft chain length or charge content. We find that the samples with lower graft density, which are partially crystalline, develop a less-ordered morphology with a lower degree of phase separation. The partially crystalline samples swell less and have a slightly lower conductivity at similar water content; the lower conductivity is attributed to a more tortuous conducting phase.