A thermal model is developed for heating and cooling of an agricultural greenhouse integrated with an aquifer coupled cavity flow heat exchanger system (ACCFHES). The ACCFHES works on the principal of utilizing deep aquifer water available at the ground surface through an irrigation tube well already installed in every agricultural field at constant year-round temperature of 24 degrees C. The analysis is based on the energy balance equations for different components of the greenhouse. Using the derived analytical expressions, a computer program is developed in C++ for computing the hourly greenhouse plant and room air temperature for various design and climatic parameters. Experimental validation of the developed model is carried out using the measured plant and room air temperature data of the greenhouse (in which capsicum is grown) for the winter and summer conditions of the year 2004-2005 at Chandigarh (31 degrees N and 78 degrees E), Punjab, India. It is observed that the predicted and measured values are in close agreement. Greenhouse room air and plant temperature is maintained 6-7 K and 5-6 K below ambient, respectively for an extreme summer day and 7-8 K and 5-6 K above ambient, respectively for an extreme winter night. Finally, parametric studies are conducted to observe the effect of various operating parameters such as mass of the plant, area of the plant, mass flow rate of the circulating air and area of the ACCFHES on the greenhouse room air and plant temperature. (c) 2006 Elsevier Ltd. All rights reserved.