The hybridization of the fuel cell (PC) hybrid electric vehicle (HEV) by an auxiliary energy source has the benefit of improving the system's dynamic response and efficiency. Indeed, an ultra-capacitor (UC) used as an energy storage device to permit the PC lowest dynamics during fast power changes and recovers the braking energy to enhance the HEV autonomy. In FC/UC HEV, an adequate power management approach is one essential objective of the researches in this area. In this paper, an advanced control strategy managing the power distribution among the two energy sources is elaborated using state-flow bloc of Matlab/Simulink The UC control power is realized indirectly through the DC bus voltage regulation. For the PC power demand, an algorithm with filtering power vibrations is developed. This algorithm, depending on the UC state of charge (SOC) and the vehicle speed to minimize the PC power demand transitions and enhance its life time. The traction power is provided utilizing two five-phase permanent magnetic synchronous machines (PMSM) in each rear wheels of the vehicle to reduce clutter caused by mechanical part. A fault tolerant strategy is added to eliminate all faults appeared in the tractions machines in aims to reduce torque ripples and power vibrations for more stability and length life time of the HEV systems. The models of the HEV and the control strategy are produced employing Matlab/Simulink. Simulation results indicate the desirability of the proposed system and its energy management strategy for HEV. Copyright (C) 2015, Hydrogen Energy Publications, LLC. Published by Elsevier Ltd. All rights reserved.