Journal of Structural Biology, Vol.192, No.3, 510-518, 2015
Structural insights on mouse L-threonine dehydrogenase: A regulatory role of Arg180 in catalysis
Mouse L-threonine dehydrogenase (mTDH), which belongs to the short-chain dehydrogenase/reductase (SDR) superfamily and mediates threonine catabolism, plays pivotal roles in both powerful biosynthesis and signaling in mouse stem cells and has a regulatory residue Arg180. Here we determined three crystal structures of mTDH: wild-type (WT) in the apo form; in complex with NAD(+) and a substrate analog, glycerol, or with only NAD(+); as well as the R180K variant with NAD(+). This is the first description of a structure for mammalian SDR-type TDH. Structural comparison revealed the structural basis for SDR-type TDH catalysis remains strictly conserved in bacteria and mammals. Kinetic enzyme assays, and isothermal titration calorimetry (ITC) measurements indicated the 180K mutation has little effect on NAD+ binding affinity, whereas affects the substrate's affinity for the enzyme. The crystal structure of R180K with HAD, biochemical and spectroscopic studies suggested that the R180K mutant should bind NAD(+) in a similar way and have a similar folding to the WE However, the R180K variant may have difficulty adopting the closed form due to reduced interaction of residue 180 with a loop which connects a key position for mTDH switching between the closed and open forms in mTDH catalysis, and thereby exhibited a significantly decreased k(cat)/K-m value toward the substrate, L-Thr. In sum, our results suggest that activity of GalE-like TDH can be regulated by remote interaction, such as hydrogen bonding and hydrophobic interaction around the Arg180 of mTDH. (C) 2015 Elsevier Inc. All rights reserved.
Keywords:L-Threonine;Nicotinamide adenine dinucleotide (NAD);Dehydrogenase;Mouse;Crystal structure;Arg180;Enzyme kinetics;Enzyme mutation