Journal of Physical Chemistry, Vol.98, No.42, 10949-10956, 1994
Peptide Dynamics in Triglycine - Coupling of Internal Bond Rotations and Overall Molecular Tumbling
As a model system, triglycine (G1-G2-G3) permits a thorough investigation of peptide backbone motional dynamics by using C-13- and N-15-NMR relaxation. Previously, rotational model analyses of the nonterminal glycine, G2, could not adequately explain C-13-NMR relaxation data Daragan, V. A.; Mayo, K. H. Biochemistry 1993, 32, 11488). In this study, N-15-NMR relaxation measurements on N-15-enriched triglycine provide additional motional vectors for more complete rotational model analyses. The inadequancy in describing G2 internal motions with models of anisotropic or restricted rotational diffusion is overcome by using a rotational jump model which has been parameterized with a semiempirical coefficient for backbone recoil rotation. Effectively, this recoil action couples internal bond rotations and overall molecular tumbling. Stochastic dynamics computer simulations using this recoil coefficient allow calculation of triglycine (CH)-C-13 and (NH)-N-15 autocorrelation times and (CH2)-C-13 cross-correlation times. Good agreement between experiment and theory is found only when strong recoil coupling is taken into account.
Keywords:MAGNETIC-RESONANCE RELAXATION;MODEL-FREE APPROACH;CONFORMATIONAL TRANSITIONS;DIELECTRIC-RELAXATION;SPIN RELAXATION;NUCLEAR;MACROMOLECULES;PROTEINS;MOTION;TENSOR