This article describes a biomass powered bubble column humidification-dehumidification desalination system. This system mainly consists of a biomass stove, air heat exchanger, bubble column humidifier and dehumidifier. Saw dust briquettes are used as biomass fuel in the stove. First level of experiments are carried out in bubble column humidifier with ambient air supply to select the best water depth, bubble pipe hole diameter and water temperature. Experiments are conducted by integrating the humidifier with the dehumidifier. Air is sent to the humidifier with and without pre-heating. Preheating of air is carried out in the air heat exchanger by using the flue gas and flame from the combustion chamber. It is observed that the humidifier ability is augmented with the rise in water depth, water temperature, mass flow rate of air and cooling water flow rate, and reduction in bubble pipe hole diameter. It is found from Taguchi analysis that the water temperature dominates in controlling the humidifier performance compared to other parameters. Better specific humidity is recorded with a bubble pipe hole diameter of 1 mm, water depth of 170 mm and water temperature of 60 degrees C. Highest distillate of 6.1 kg/h and 3.5 kg/h is collected for the HDH desalination system with preheated air and direct air supply respectively. Recovery of waste heat using an air heat exchanger reduces the fuel consumption from 0.36 kg to 0.2 kg for producing 1 kg of distilled water. Lowest distilled water cost of 0.0133 US $/kg through preheated air supply and 0.0231 US $/kg through direct air supply is observed. A correlation is developed to estimate the mass transfer coefficient and it agrees with the maximum deviation of 9% from experimental results. (C) 2017 Elsevier Ltd.