Preparation of suprastructure assemblies with unique colloidal and optical properties remains challenging. Non-uniform covering of magnetic nanoparticles (NPs) with an external inert Au shell has been attempted to protect the magnetic core against oxidation as well as to produce multifunctional supra particles (SPs) possessing respective optical and magnetic properties. In this study, a concave Au NP coating was deposited on magnetic nanoparticles (MNPs) with precise control of the shell thickness and roughness through a layer-by-layer (LbL) assisted ionic reduction method termed ion-reducible LbL (IR-LbL) method. Surface enhanced Raman spectra were obtained using graphene quantum dots (GQDs) on the magnetically aligned structure of the prepared core-shell SPs. It is probable that this synthesis method and the generated SPs are essential for characterizing the merge of electronics and magnetism in the nano-regime and may be applicable for further electronics, magnetic storage, and biomedical applications. (C) 2017 Elsevier Inc. All rights reserved.