In recent years, carbon dots (CDs) have attracted much attention in the material field because of their remarkable performance in various aspects. Therefore, the exploration of complex and variable photoluminescence mechanisms shows great significance. Herein, we present a systematic study on the correlation between the formation process and photoluminescence mechanisms through the characterization and analysis of three states of nitrogen doped carbon dots (N-CDs) obtained by microwave irradiation. At low temperature of 160 degrees C, the small organic molecule polymer nanodots whose photoluminescence center is molecule state are obtained with superior quantum yield of about 51.61%. Increasing the reaction temperature up to 200 degrees C, the intermediate transition products named carbon nanodots begin to appear. Prolonging the holding time, the typical carbon quantum dots with a special stable optical properties are finally generated, and their most photoluminescence arises from the carbon cores which are gained through the polymerization, dehydration, carbonation of organic fluorescent molecules. Furthermore, N-CDs have been applied in metal ions detection as well as animal and plant cell fluorescence imaging owing to their excellent water solubility and low cytotoxicity. Our exploration provides the theoretical basis for synthesis of CDs with different properties and purposes. In the near future, more high-quality CDs will be developed in order to better benefit the various fields of mankind. (C) 2017 Published by Elsevier B.V.