A three-dimensional multiphase numerical model for proton exchange membrane fuel cell (PEMFC) is developed to study the fuel cell performance and water transport properties with low external humidification. The results show that the sufficient external humidification is necessary to prevent the polymer electrolyte dehydration at low current density, while at high current density, the water produced in cathode CL is enough to humidify the polymer electrolyte instead of external humidification by flowing back and forth between the anode and cathode across the membrane. Furthermore, a steady anode circulation status without external humidification is demonstrated in this study, of which the detailed internal water transfer path is also illustrated. Additionally, it is also found that the water balance under the counter-flow arrangement is superior to co-flow at low anode external humidification.