In this study, the effect of clamping pressure on the performance of a proton exchange membrane fuel cell (PEMFC) is investigated for three different widths of channel. The deformation of gas diffusion layer (GDL) due to clamping pressure is modeled using a finite element method, and the results are applied as inputs to a CFD model. The CFD analysis is based on finite volume method in non-isothermal condition. Also, a comparison is made between three cases to identify the geometry that has the best performance. The distribution of temperature, current density and mole fraction of oxygen are investigated for the geometry with best performance. The results reveal that by decreasing the width of channel, the performance of PEMFC improves due to increase of flow velocity. Also, it is found that intrusion of GDL into the gas flow channel due to assembly pressure deteriorates the PEMFC performance, while decrease of GDL thickness and GDL porosity have smaller effects. It is shown that assembly pressure has a minor effect on temperature profile in the membrane-catalyst interface at cathode side. Also, assembly pressure has a significant effect on ohmic and concentration losses of PEMFC at high current densities. (C) 2018 Hydrogen Energy Publications LLC. Published by Elsevier Ltd. All rights reserved.