This paper aims to investigate the effect of adding nanoparticles to the adhesive layer on the shear strength and elongation at failure of adhesively bonded single lap joints (SLJs). Two different toughening particles including the silica nanoparticles (SNPs) and the multi-walled carbon nanotubes (MWCNTs) were considered for reinforcing the adhesive joints. The experimental results showed that the highest improvements in the SLJ shear strength and elongation at failure were obtained for 0.2 and 0.8 wt% of MWCNTs and SNPs, respectively. The fractography results indicated that adding nanoparticles improved the failure mode from adhesive to dominant cohesive representing improved adhesion between the adhesive and adherends. Moreover, different damage mechanisms were observed for the adhesives reinforced with different toughening particles. Several mechanisms including crack growth deviation, shear yielding, plastic deformation, and pull out phenomena were observed from scanning electron microscope (SEM) fractography of the fracture surfaces of the joints reinforced by MWCNTs. While in the case of reinforcing by SNPs, the shear yielding, the particle debonding, and subsequent void growth were found as the effective energy absorbing mechanisms.