Journal of Physical Chemistry A, Vol.122, No.4, 890-896, 2018
Gas-Phase Oxidation of the Protonated Uracil-5-yl Radical Cation
This study targets the kinetics and product detection of the gas-phase oxidation reaction of the protonated 5-dehydrouracil (uracil-5-yl) distonic radical cation using ion trap mass spectrometry. Protonated 5-dehydrouracil radical ions (5-dehydrouracil(H+) radical ion, m/z 112) are produced within an ion trap by laser photolysis of protonated Storage of the 5-dehydrouracil(H+) radical ion in the presence of controlled concentration of O-2 reveals two main products. The major reaction product pathway is assigned as the formation of protonated 2-hydroxypyrimidine-4,5-dione (m/z 127) + (OH)-O-center dot. A second product ion (m/z 99), putatively assigned as a five member-ring ketone structure, is tentatively explained as arising from the decarbonylation (-CO) of protonated 2-hydroxypyrimidine-4,5-dione. Because protonation of the 5-dehydrouracil radical likely forms a dienol structure, the O-2 reaction at the position is ortho to an -OH group. Following this addition of OD the peroxyl-radical intermediate isomerizes by H atom transfer from the -OH group. The ensuing hydroperoxide then decomposes to eliminate (OH)-O-center dot radical. It is shown that this elimination of (OH)-O-center dot radical (-17 Da) is evidence for the presence of an -OH group ortho to the initial phenyl radical site, in good accord with calculations. The subsequent CO loss mechanism, to form the aforementioned five-member-ring structure, is unclear, but some pathways are discussed, By following the kinetics of the reaction, the room temperature second-order rate coefficient of the 5-dehyclrouracilH(+) distonic radical cation with molecular oxygen is measured at 7.2 x 10(-11) cm(3) molecule(-1) s(-1), Phi = 12% (with +/- 50% total accuracy). For aryl radical reactions with O-2, the presence of the (OH)-O-center dot elimination product pathway, following the peroxyl-radical formation, is an indicator of an -OH group Urdu) to the radical site.