Herein, a novel strategy is established to synthesize Mo-doped graphitic carbon nitride (g-C3N4) with excellent photocatalytic activity through a green approach of biological template. The addition of biotemplates provides a microenvironment for the formation of hydrogen bonds in which the flower-like g-C3N4 is formed by self-assembly between precursors, which not only increases the specific surface area of the material but also exposes more catalytic activity edge. Benefiting from the non-localized of Mo(VI) 4d orbital, Mo-doped g-C(3)N(4 )constructs a suitable band structure and a built-in electric field that promotes electron delocalization, which improves the absorption range of visible light and separation efficiency of photo-generated electron-hole pairs. Subsequently, a possible chelation-hydrogen bond coordination mechanism was proposed based on the characterization results of X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS), electron paramagnetic resonance (EPR) and N-15 solid-state NMR (N-15 NMR). As a result, the pi-conjugated system of g-C3N4 was extended by forming a chelate centered on Mo(VI). Photocatalytic hydrogen evolution (PHE) showed that the optimal hydrogen evolution rate of Mo-doped g-C3N4 was as high as 2008.9 umol/g.h, which was 9.6 times than that of bulk g-C3N4.