Water management is critical to the performance and operation of the proton exchange membrane fuel cell (PEMFC). Effective water removal from the gas diffusion layer (GDL) surface exposed to the gas flow channel in PEMFC mitigates the water flooding of and improves the reactants transport into the GDL, hence benefiting the PEMFC performance. In this study, a 3D numerical investigation of water removal from the GDL surface in a modified PEMFC gas flow channel having a hydrophilic needle is carried out. The effects of the needle orientation (inclination angle) and gas velocity on the water transport and removal are investigated. The results show that the water is removed from the GDL surface in the channel for a large range of the needle inclination angle and gas velocity. The water is removed more effectively, and the pressure drop for the flow in the channel is smaller for a smaller needle inclination angle. It is also found that the modified channel is more effective and viable for water removal in fuel cells operated at smaller gas velocity.