Hydrogen-based vehicular traction has already reached a mature technological level and can replace the more polluting diesel engines. The adoption of this technology can also alleviate the carbon footprint issue of the rail trains running on non-electrified lines. This study presents a model and a numerical performance analysis of an electric hybrid train in an urban context. The train uses hydrogen as fuel and operates over non-electrified lines with zero local emission. The electric traction motors of the train are fed by a hybrid power unit consisting of several hydrogen fuel cell stacks operating independently in on/off mode and a set of flywheel energy storage devices. Each component of the power train is modeled separately and its operating limits are chosen on the base of technical literature. An innovative predictive logic to manage power flows is defined and proposed with the aim to minimize the fuel consumption. Furthermore, this approach uses a regenerative electrical braking and eliminates dissipative devices, like rheostats, which are commonly utilized onboard electric trains. This predictive approach is based on the optimal management of the power unit components according to the advanced knowledge of the data of the rail vehicle, the characteristics of path, drive cycle and payload for an established route. The fuel cell stacks operate accordingly to the average traction power requirement in each railway line section, whereas the flywheel energy storage system manages the dynamic power. A parametric model of the system and a respective software tool have been developed; this implementation, that incorporates many tunable parameters of the train and rail path, is able to simulate the rail train operating on a specific railway path by implementing the novel control strategy. An existing single track non-electrified line, designed again for urban service, has been selected as a case study to evaluate the performance of the proposed system. The specific fuel consumptions obtained with the novel control strategy and with a single fuel cell system operating at constant power are compared under the same operating conditions. The results highlight that significant fuel savings can be achieved. (C) 2019 Hydrogen Energy Publications LLC. Published by Elsevier Ltd. All rights reserved.