Atomic hydrogen plays an important role in GaN, passivating the electrical activity of Mg accepters during cooldown after metal organic chemical vapor deposition growth, and thereby preventing achievement of high p-type doping levels unless an annealing step is performed. We have found that hydrogen is easily incorporated into GaN and related materials during many different process steps, including boiling in water, wet chemical etching in KOH-based solutions, dielectric deposition using SiH4 or dry etching in Cl-2/CH4/H2Ar electron cyclotron resonance plasmas. In each of these cases we have employed deuterated chemicals and detected the incorporation of deuterium into GaN using high sensitivity secondary ion mass spectroscopy measurements. Hydrogen is found to have a diffusivity of >10(-11) cm(2)s(-1) at 170 degrees C, and to passivate the electrical activity of Mg and C accepters and also the native shallow donors in InGaN and InAlN. Annealing at 450-500 degrees C restores the electrical activity, but the hydrogen does not physically leave the films until much higher (similar to 800 degrees C)temperatures. The activation energies for dopant reactivation are of the order of 2.5 eV in bulk samples, where hydrogen retrapping is expected to be significant.