We derive a homogenized macroscopic model for fluid flows over ordered homogeneous porous surfaces. The unconfined free flow is described by the Navier-Stokes equation, and the Darcy equation governs the seepage flow within the porous domain. Boundary conditions that accurately capture mass and momentum transport at the contact surface between these two domains are derived using the multiscale homogenization technique. In addition to obtaining the generalized version of the widely used Beavers-Joseph slip condition for tangential velocities, the present work provides an accurate formulation for the transpiration velocity and pressure jump at fluid-porous interfaces; these two conditions are essential for handling two- and three-dimensional flows over porous media. All the constitutive parameters appearing in the interface conditions are computed by solving a set of Stokes problems on a much smaller computational domain, making the formulations free of empirical parameters. The tensorial form of the proposed interface conditions makes it possible to handle flows over isotropic, orthotropic, and anisotropic media. A subset of interface conditions, derived for porous media, can be used to model flows over rough walls. The accuracy of the proposed macroscopic model is numerically quantified for flows over porous and rough walls by comparing the results from our homogenized model with those obtained from geometry-resolved microscopic simulations.