In this paper we obtain the forward equations associated with the evolution of the density, if it exists, of reflected diffusions on the positive orthant with jumps which form a marked point process whose random jump measure possesses a stochastic intensity. These results generalize the so-called generalized Dynkin equations for piecewise deterministic jump processes due to Davis. We then consider the stationary case where the existence of a stochastic intensity is not needed. The techniques are based on local times and the use of random jump measures. We discuss the application of these results to problems arising in queuing and storage processes as well as stationary distributions of diffusions with delayed and jump reflections at the origin.