The transport properties and the swelling behaviour of NAFION and different sulfonated polyetherketones are explained in terms of distinct differences on the microstructures and in the pK(a) of the acidic functional groups. The less pronounced hydrophobic/hydrophilic separation of sulfonated polyetherketones compared to NAFION corresponds to narrower, less connected hydrophilic channels and to larger separations between less acidic sulfonic acid functional groups. At high water contents, this is shown to significantly reduce electroosmotic drag and water permeation whilst maintaining high proton conductivity. Blending of sulfonated polyetherketones with other polyaryls even further reduces the solvent permeation (a factor of 20 compared to NAFION), increases the membrane flexibility in the dry state and leads to an improved swelling behaviour. Therefore, polymers based on sulfonated polyetherketones are not only interesting low-cost alternative membrane material for hydrogen fuel cell applications, they may also help to reduce the problems associated with high water drag and high methanol cross-over in direct liquid methanol fuel cells (DMFC). The relatively high conductivities observed for oligomers containing imidazole as functional groups may be exploited in fully polymeric proton conducting systems with no volatile proton solvent operating at temperatures significantly beyond 100 degreesC, where methanol vapour may be used as a fuel in DMFCs.