The modeling of biological systems has now become an essential prerequisite for effective bioprocess design, optimization and analysis. The difficulties present in using conventional techniques to model such a complex system make the application of artificial neural networks (ANNs) to these problems particularly attractive because of their capability for nonlinear mapping and lack of necessity for detailed mechanistic knowledge. However, building a reliable ANN model requires sufficient training data, which may be difficult when data are collected from litre-scale experiments. In this work, a bioconversion (with only limited experimental data) was firstly modeled by a radial basis function (RBF) neural network. Although the model provided a very low variance between experiment and simulation, it tended to result in oscillatory behaviour, which clearly does not reflect the accurate profile of the reaction. In order to overcome this drawback, wavelet shrinkage with biorthogonal filters was used to generate a reconstructed function using the RBF model as a base. The synthesis of N-acetyl-D-neuraminic acid by the enzymatic condensation of pyruvate with N-acetyl-D-mannosamine was used as a case study to show the effectiveness of the approach. The effects of alternative filters and border distortion are also discussed.