Electrostatically bonded SiO2.Au nanoparticle clusters form by reaction of 3-aminopropylsilane-modified SiO2 spheres (470 nm) with citrate-coated gold nanoparticles (9.7 nm) in water. Reaction of the clusters with 0.01 M KBr or HCl solution induces desorption of the gold nanoparticles within minutes. Reaction of the clusters with alkanethiols CnH2n+1SH (n = 2-18) at 80 degreesC causes the gold nanoparticles to form stringlike gold nanoparticle structures for thiols with short alkane groups (n = 2, 3, 4) and hexagonally packed arrays of gold nanoparticles for thiols with long alkane groups (n = 5-18) on the silica surfaces. The structural changes indicate that the bonding between Au and SiO2 nanoparticles has changed from electrostatic to van der Waals. Elemental analyses show that the reaction with hexanethiol does not affect the Au/Si/O composition of the SiO2.Au cluster, and Raman spectra on the hexanethiol-reacted cluster indicate the formation of a thiol SAM on the gold nanoparticles. The thiol-reacted SiO2.Au clusters display characteristic shifts of the absorption maxima in the visible spectra, and there is an inverse relation between these shifts and the lengths of the alkyl groups in the thiols. This relationship can be understood in terms of the free electron model for metals. The use of SiO2.Au nanoparticle clusters as coulometric sensors for the qualitative detection of thiols is discussed.