Journal of Physical Chemistry B, Vol.108, No.39, 15311-15320, 2004
Optimal length and signal amplification in weakly activated signal transduction cascades
Weakly activated signaling cascades can be modeled as linear systems. The input-to-output transfer function and the internal gain of a linear system provide natural measures for the propagation of the input signal down the cascade and for the characterization of the final outcome. The most efficient design of a cascade for generating sharp signals is obtained by choosing all the off rates equal and a "universal" finite optimal length.