An innovative configuration of fuel cell technology is proposed based on a hybrid fuel cell system that integrates a turbogenerator to overcome the intrinsic limitations of fuel cells in conventional operation. An analysis is done of the application of molten carbonate fuel cell technology at the Guadalix Fuel Cell Test Facility, for the assessment of the performance of the fuel cell prototype to be integrated in the Hybrid Fuel Cell System. This is completed with a thermoeconomic analysis of the 100 kW cogeneration fuel cell power plant which was subsequently built. The operational results and design limitations are evaluated, together with the operational limits and thermodynamic inefficiencies (exergy destruction and losses) of the 100 kW fuel cell. This leads to the design of a hybrid system in order to demonstrate the possibilities and benefits of the new hybrid configuration. The results are quantified through a thermoeconomic analysis in order to get the most cost-effective plant configuration. One promising configuration is the MCFC topper where the fuel cell in the power plant behaves as a combustor for the turbogenerator. The latter behaves as the balance of plant for the fuel cell. The combined efficiency increased to 57% and NOx emissions are essentially eliminated. The synergy of the fuel cell/turbine hybrids lies mainly in the use of the rejected thermal energy and residual fuel from the fuel cell to drive the turbogenerator in a 500 kW hybrid system. (C) 2005 Elsevier Ltd. All rights reserved.