A detailed infrared and XPS characterization of surface-chemical gradients of dodecanethiol with 11-mercaptoundecanol or 11-mercaptoundecanoic acid self-assembled on gold, is reported. Gradients were prepared using a simple, two-step process previously reported from our laboratory, which involves a controlled immersion of a polycrystalline gold substrate in a dilute (5 mu M) solution of one component and a subsequent back-filling with the other. FTIR measurements show that a single-component gradient of dodecanethiol is composed of disordered, liquidlike alkyl chain conformations. Such a gradient, when back-filled with a complementary thiol, having either a hydroxyl or carboxyl end-group, yields two-component gradients that show similar changes in wettability along their lengths. However, while gradients composed of methyl and hydroxyl end-groups show a well-ordered alkyl chain structure over their entire length, methyl-carboxyl gradients exhibit a greater conformational disordering toward the carboxyl-rich end.