In a previous paper, we reported the micropatterning of magnetically isotropic particles using a microscopically modulated magnetic field. In this paper, we report that the alignment occurs simultaneously if the particles have magnetic anisotropy. An oil-in-water emulsion of p-terphenyl or anthracene was subjected to the modulated magnetic field and allowed to evaporate the solvent to obtain a line pattern consisting of the crystallites with alignment. The patterned samples exhibited an emission strongly polarized in the direction of the applied magnetic field that is perpendicular to the patterning lines.