Journal of Physical Chemistry A, Vol.110, No.25, 7904-7912, 2006
Dimers of and tautomerism between 2-pyrimidinethiol and 2(1H)-pyrimidinethione: A density functional theory (DFT) study
Density functional theory (BLYP, B3LYP, B3P86, B3PW91) with the 6-31+G(d,p), 6-311+G(d,p), and cc-pVTZ basis sets has been used to calculate structural parameters, relative energies, and vibrational spectra of 2-pyrimidinethiol (1) and 2(1H)-pyrimidinethione (2) and their hydrogen-bonded homodimers (C-2 3, C-2h 4], C-2h 5), monohydrates, and dihydrates and a heterodimer (6). Several transition state structures proposed for the tautomerization process have also been examined. At the B3PW91/6-311+G(d,p)//B3PW91/6-31+G( d, p) level of theory 2-pyrimidinethiol (1) is predicted to be 3.41 kcal/mol more stable (E-rel) than 2(1H)-pyrimidinethione (2) in the gas phase and 2 is predicted to be 6.47 kcal/mol more stable than 1 in aqueous medium. An unfavorable planar intramolecular strained four center transition state (TS1) for the tautomerization of 1 and 2 in the gas-phase lies 29.07 kcal/mol higher in energy than 2-pyrimidinethiol (1). The C-2 2-pyrimidinethiol dimer (3) is 6.84 kcal/mol lower in energy than the C-2 homodimer transition state structure ([11](double dagger)) that connects dimers 3 and 4. Transition state [11](double dagger) provides a facile pathway for tautomerization between 1 and 2 in the gas phase (monomer-dimer promoted tautomerization). The hydrogen bonded 2-pyrimidinethiol- - - H2O and 2-pyrimidinethiol- - - 2H(2)O structures are predicted to be 1.27 and 1.55 kcal/ mol, respectively, higher in energy than 2(1H)-pyrimidinethione- - - H2O and 2(1H)-pyrimidinethione-- - 2H(2)O. Water promoted tautomerization via cyclic transition states involving one water molecule (TS- - - H2O, [12](double dagger)) and two water molecules ( TS- - - 2H2O, [ 13]) lie 11.42 and 11.44 kcal/mol, respectively, higher in energy than 2-pyrimidinethiol- - - H2O and 2-pyrimidinethiol- - - 2H(2)O. Thus, the hydrated transition states [ 2] and [13](double dagger) are involved in the tautomerism between 1 and 2 in aqueous medium.