Optically amplified photochemistry with slow photons has been realized in our previous work when a photoactive material such as TiO2 was molded into a photonic crystal and the corresponding energy of photonic bands overlapped with the electronic excitation. While numerous applications of photonic crystals have been proposed, the real practicality depends on the extent of structural imperfection that can be tolerated before significant deterioration in the optical response deems it unrealistic to use. As a result, it is important to evaluate the amount of structural disorder that can be tolerated in inverse TiO2 opals if they are to be used as amplified photocatalysts for photolytic degradation of organics in environmental remediation and water purification. We present a systematic study on the effect of disorder with relation to the photocatalytic efficiency of oxidizing methylene blue dye adsorbed on inverse TiO2 opals by introducing different fractions and sizes of guest spheres into the opal template. Our results show that half of the enhancement originally achieved by the inverse opal made from monodispersed 150-nm spheres is conserved when the domain size of the host spheres remains above a critical threshold. The substitution fraction can be as high as 0.4 when the guest spheres are 1.2 times larger than the host spheres. Such a high tolerance to structural disorder provides strong support for the potential use of inverse TiO2 opals in environmental cleanup and water treatment applications.