In order to improve the water quality in the shrimp aquaculture, we tested a sequencing batch reactor (SBR) for the treatment of shrimp wastewater. A SBR is a variation of the activated sludge biological treatment process. This process uses multiple steps in the same tank to take the place of multiple tanks in a conventional treatment system. The SBR accomplishes pH correction, aeration, and clarification in a timed sequence, in a single reactor basin. This is achieved in a simple tank, through sequencing stages, which includes fill, react, settle, decant, and idle. The wastewater from the Waddell Mariculture Center, South Carolina was successfully treated using a SBR. The wastewater contained high concentration of carbon and nitrogen. By operating the reactor sequentially, viz, aerobic, anaerobic, and aerobic modes, nitrification and denitrification were achieved as well as removal of carbon. We optimized various environmental parameters such as temperature, salinity, and carbon and nitrogen ratio (C:N ratio) for the best performance of SBR. The results indicated that the salinity of 28-40 parts per thousand (ppt), temperature range of 22-37 degrees C, and a C:N ratio of 10:1 produced best results in terms of maximum nitrogen and carbon removal from the wastewater. The SBR system showed promising results and could be used as a viable treatment alternative in the shrimp industry. (c) 2006 Elsevier Ltd. All rights reserved.