Biochemical and Biophysical Research Communications, Vol.331, No.1, 167-174, 2005
DNA vector-based RNAi approach for stable depletion of poly(ADP-ribose) polymerase-1
RNA-mediated interference (RNAi) is a powerful technique that is now being used in mammalian cells to specifically silence a gene. Some recent studies have used this technique to achieve variable extent of depletion of a nuclear enzyme poly(ADP-ribose) polymerase-1 (PARP-1). These studies reported either transient silencing of PARP-1 using double-stranded RNA or stable silencing of PARP-1 with a DNA vector which was introduced by a viral delivery system. In contrast, here we report that a simple RNAi approach which utilizes a pBS-U6-based DNA vector containing strategically selected PARP-1 targeting sequence, introduced in the cells by conventional CaPO4 protocol. can be used to achieve stable and specific silencing of PARP-1 in different types of cells. We also provide a detailed strategy for selection and cloning of PARP-1-targeting sequences for the DNA vector, and demonstrate that this technique does not affect expression of its closest functional homolog PARP-2. © 2005 Elsevier Inc. All rights reserved.
Keywords:RNA interference;small interfering RNA;small hairpin RNA;poly(ADP-ribose) polymerase-1;PARP-2