화학공학소재연구정보센터
Journal of the American Chemical Society, Vol.129, No.26, 8259-8270, 2007
Oxepane nucleic acids: Synthesis, characterization, and properties of oligonucleotides bearing a seven-membered carbohydrate ring
The synthesis and properties of oxepane nucleic acids (ONAs) are described. ONAs are sugar-phosphate oligomers in which the pentofuranose ring of DNA and RNA is replaced with a seven-membered (oxepane) sugar ring. The oxepane nucleoside monomers were prepared from the ring expansion reaction of a cyclopropanated glycal, 1, and their conversion into phosphoramidite derivatives allowed efficient assembly of ONAs on a solid support. ONAs (oT(15) and oA(15)) were found to be much more resistant toward nuclease degradation than natural DNA (dT(15) and dA(15)) in fetal bovine serum (FBS) after 24 h of incubation at 37 degrees C. ONAs also display several attributes in common with the naturally occurring DNA. For example, oT(15) exhibited cross-pairing with complementary RNA to give a duplex (oT(15)/rA(15)) whose conformation evaluated by CD spectroscopy very closely matched that of the natural DNA/RNA hybrid (dT(15)/rA(15)). Furthermore, oT(15) was found to elicit Escherichia coli RNase H-mediated degradation of the rA(15) strand. When we compared the rates of RNase H-mediated degradation induced by 5- (furanose, dT(15)), 6- (2'-enopyranose, pT(18)), and 7-membered (oxepane, oT(15)) ring oligonucleotides at a temperature that ensures maximum duplex population (10 degrees C), the following trend was observed: dT(15) > oT(15) > pT(18.) The wider implications of these results are discussed in the context of our current understanding of the catalytic mechanism of the enzyme. The homopolymer oT(15) also paired with its oxepane complement, oA(15), to form a duplex structure that was different [as assessed by circular dichroic (CD) spectroscopy] and of lower thermal stability relative to the native dT(15)/dA(15) hybrid. Hence, ONAs are useful tools for biological studies and provide new insights into the structure and function of natural and alternative genetic systems.