This paper deals with a flatness based control principle in a hybrid system utilizing a fuel cell as a main power source and a supercapacitor as an auxiliary power source. The control strategy is based on regulation of the dc bus capacitor energy and, consequently, voltage regulation. The proposed control algorithm does not use a commutation algorithm when the operating mode changes with the load power variation and, thus, avoids chattering effects. Using the flatness based control method, the fuel cell dynamic and its delivered power is perfectly controlled, and the fuel cell can operate in a safe condition. In the hybrid system, the supercapacitor functions during transient energy delivery or during energy recovery situations. To validate the proposed method, the control algorithms are executed in dSPACE hardware, while analogical current loops regulators are employed in the experimental environment. The experimental results prove the validity of the proposed approach. (C) 2007 Published by Elsevier Ltd.