In this work, the hydrogenation of cyclohexene over Ru-Zn/Ru(0 0 0 1) surface alloy was investigated by a DFT study so as to improve the understanding of the catalytic mechanism of the partial hydrogenation of benzene to cyclohexene over Ru-Zn alloy catalyst. Calculation results show that the presence of Zn atoms on the surface alloy results in not only a direct decrease in sites for the chemisorption of cyclohexene but also a depressed adsorption capability of the neighboring surface Ru sites. For an adsorbed cyclohexene molecule, whether the subsequent hydrogenation can be readily performed actually is determined by the relative position among the Zn atom, the H atom, and the adsorbed cyclohexene molecule. In most cases, the hydrogenation is forbidden because of the repulsion from Zn atoms to the nearby H atoms. Only in the specific situations in which the H atom participating in the reaction is not immediately close to the Zn atom, can the hydrogenation be accomplished with a relatively lower activation energy compared with the reactions on the Ru(0 0 0 1) surface. From the perspectives of adsorption and reaction kinetics, Ru-based catalyst modified by metallic Zn is no longer suitable for the hydrogenation of cyclohexene, which is supposed to be crucial to the improvement of cyclohexene yield in the partial hydrogenation of benzene over Ru-Zn alloy catalyst. (C) 2008 Elsevier B.V. All rights reserved.