Journal of the American Chemical Society, Vol.131, No.22, 7496-7496, 2009
Redox-Linked Structural Changes in Ribonucleotide Reductase
Ribonucleotide reductase (RNR) catalyzes the reduction of ribonucleotides to deoxyribonucleotides. Class I RNRs are composed of two homodimeric proteins, alpha 2 and beta 2. The class Ia E. coli beta 2 contains dinuclear, antiferromagnetically coupled iron centers and one tyrosyl free radical, Y122 center dot/beta 2. Y122 center dot acts as a radical initiator in catalysis. Redox-linked conformational changes may accompany Y122 oxidation and provide local control of proton-coupled electron transfer reactions. To test for such redox-linked structural changes, FT-IR spectroscopy was employed in this work. Reaction-induced difference spectra, associated with the reduction of Y122 center dot by hydroxyurea, were acquired from natural abundance, H-2(4) tyrosine, and N-15 tyrosine labeled beta 2 samples. Isotopic labeling led to the assignment of a 1514 cm(-1) band to the u19a ring stretching vibration of Y122 and of a 1498 cm(-1) band to the u7a CO stretching vibration of Y122 center dot. The reaction-induced spectra also exhibited amide I bands, at 1661 and 1652 cm(-1). A similar set of amide I bands, with i frequencies of 1675 and 1651 cm(-1), was observed when Y center dot was generated by photolysis in a pentapeptide, which matched the primary sequence surrounding Y122. This result suggests that reduction of Y122 center dot is linked with structural changes at nearby amide bonds and that this perturbation is mediated by the primary sequence. To explain these data, we propose that a structural perturbation of the amide bond is driven by redox-linked electrostatic changes in the tyrosyl radical aromatic ring.