This study demonstrates how luminescent semiconductor nanocrystals (quantum dots or QDs) can be dispersed uniformly in a poly(dimethylsiloxane) (PDMS) matrix by polymerizing a mixture of the prepolymer oligomers and the nanocrystals with a relatively large concentration of crosslinking molecules. A microfluidic device is used to fabricate PDMS microbeads embedded with the QDs by using flow focusing to first form monodisperse droplets of the prepolymer/crosslinker/nanocrystal mixture in a continuous aqueous phase. The droplets are subsequently collected, and heated to polymerize them into solid microbead composites. The degree of aggregation of the nanocrystals in the matrix is studied by measuring the nonradiative resonance energy transfer (RET) between the nanocrystals. For this purpose, two quantum dots are used with maxima in their luminescence emission spectrum at 560 nm and 620 nm. When the nanocrystals are within the Forster radius (approximately 10 nm) of each other, exciton energy cascades from the QDs which emit at the shorter wavelength to the QDs which emit at the longer wavelength. This energy transfer is quantified, for two concentration ratios of the prepolmer to the crosslinker, by measuring the deviation of the microbead luminescence spectrum from a reference spectrum obtained by dispersing the QD mixture in a solvent (toluene) in which the nanocrystals do not aggregate. For a low concentration of crosslinking molecules relative to the prepolymer (5:1 by weight prepolymer to crosslinker), strong RET is observed as the emission of the 620 nm QDs is increased and the 560 nm QDs is decreased relative to the reference. In the emission spectrum for a higher concentration of crosslinkers (2:1 by weight prepolymer to crosslinker), the resonance energy transfer is less relative to the case of the low concentration of crosslinkers, and the spectrum more closely resembles the reference. This result indicates that the increase in the crosslinker concentration has reduced the nanocrystal aggregation in the cured polymer. The use of crosslinking can serve as a general paradigm for forming, from a prepolymer/nanoparticle mixture, a composite in which the particles are not aggregated. Under the usual conditions the entropic cost to a linearly growing polymer chain of surrounding nanoparticles forces them to aggregate; crosslinking kinetically entraps the particles and circumvents this aggregation driving force. The QD/polymer composite microbeads fabricated in this study find applications in bead-based platforms for high-throughput, multiplexed screening, where the emission spectrum of the QD luminescence can be used as a spectral barcode to label the beads. For microbeads in which the nanocrystals are uniformly dispersed, this barcode is undistorted by energy transfer, and is easily read. (C) 2011 Elsevier Inc. All rights reserved.