In this study, the results from a systematic analysis of two different mechanisms for the skeletal isomerization of cis-butene to isobutene in ferrierite (FER) are presented. One involves a conventional mechanism that proceeds via stable alkoxide intermediates and the other is one which proceeds via carbenium ions only. A 27T QM duster model has been used in this study, which is described using the M06-2X DFT functional. It is found that the alkoxide intermediates formed over the course of the conventional pathway are considerably lower in energy than the carbenium ion formed over the course of the alternate pathway. However, the rate determining step in the latter pathway is predicted to be almost 10 kcal/mol lower in energy. The higher barrier for the latter process is due to the inherent stability of the alkoxide intermediates formed within FER These results appear to suggest that while these intermediates are formed over the course of the reaction, the skeletal isomerization of linear butenes to form isobutene in FER may occur via a carbenium based mechanism. This proposal is consistent with experimental results that show alkoxide intermediates are experimentally observed species.