The performance of a novel three-stage vermifiltration (VF) system using the earthworm. Eisenia fetida. for rural domestic wastewater treatment was studied during a 131-day period. The average removal efficiencies of the tower VF planted with Penstemon campanulatus were as follows: chemical oxygen demand, 81.3%; ammonium, 98%; total nitrogen, 60.2%; total phosphorus, 98.4%; total nitrogen, mainly in the form of nitrate. Soils played an important role in removing the organic matter. The three-sectional design with increasing oxygen demand concentration in the effluents, and the distribution of certain oxides in the padding were likely beneficial for ammonium and phosphorus removal, respectively. The microbial community profiles revealed that band patterns varied more or less in various matrices of each stage at different sampling times, while the presence of earthworms intensified the bacterial diversity in soils. Retrieved sequences recovered from the media in VF primarily belonged to unknown bacterium and Bacilli of Firmicutes. (C) 2011 Elsevier Ltd. All rights reserved.